IL_7BHP_073
3D structure
- PDB id
- 7BHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human Ebp1 - 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BHP_073 not in the Motif Atlas
- Geometric match to IL_4V9F_038
- Geometric discrepancy: 0.1384
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
7BHP|1|L5|C|1911
7BHP|1|L5|G|1912
7BHP|1|L5|C|1913
7BHP|1|L5|C|1914
7BHP|1|L5|C|1915
7BHP|1|L5|G|1916
7BHP|1|L5|A|1917
7BHP|1|L5|U|1918
*
7BHP|1|L5|G|2064
7BHP|1|L5|G|2065
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lf
- 60S ribosomal protein L35a
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