IL_7BHP_095

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAG*CGUGC

Length

9 nucleotides

Bulged bases

7BHP|1|L5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_095 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.3333

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7BHP|1|L5|G|2645
7BHP|1|L5|C|2646
7BHP|1|L5|A|2647
7BHP|1|L5|G|2648
*
7BHP|1|L5|C|2685
7BHP|1|L5|G|2686
7BHP|1|L5|U|2687
7BHP|1|L5|G|2688
7BHP|1|L5|C|2689

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34