IL_7BHP_102

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7BHP|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_102 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1405

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7BHP|1|L5|C|2867
7BHP|1|L5|G|2868
7BHP|1|L5|U|2869
7BHP|1|L5|A|2870
7BHP|1|L5|A|2871
7BHP|1|L5|C|2872
*
7BHP|1|L5|G|2877
7BHP|1|L5|G|2878
7BHP|1|L5|A|2879
7BHP|1|L5|U|2880
7BHP|1|L5|A|2881
7BHP|1|L5|A|2882
7BHP|1|L5|G|2883

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lp

60S ribosomal protein L37a