IL_7BHP_106

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7BHP|1|L5|A|3663, 7BHP|1|L5|U|3679, 7BHP|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_106 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0922

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7BHP|1|L5|C|3660
7BHP|1|L5|G|3661
7BHP|1|L5|A|3662
7BHP|1|L5|A|3663
7BHP|1|L5|G|3664
7BHP|1|L5|G|3665
*
7BHP|1|L5|U|3677
7BHP|1|L5|G|3678
7BHP|1|L5|U|3679
7BHP|1|L5|U|3680
7BHP|1|L5|G|3681
7BHP|1|L5|A|3682
7BHP|1|L5|C|3683
7BHP|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a