IL_7BHP_113

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7BHP|1|L5|A|3785, 7BHP|1|L5|C|3791, 7BHP|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_113 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1048

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7BHP|1|L5|C|3781
7BHP|1|L5|C|3782
7BHP|1|L5|A|3783
7BHP|1|L5|A|3784
7BHP|1|L5|A|3785
7BHP|1|L5|U|3786
7BHP|1|L5|G|3787
7BHP|1|L5|C|3788
7BHP|1|L5|C|3789
7BHP|1|L5|U|3790
7BHP|1|L5|C|3791
7BHP|1|L5|G|3792
*
7BHP|1|L5|C|3808
7BHP|1|L5|G|3809
7BHP|1|L5|C|3810
7BHP|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains