3D structure

PDB id
7BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human Ebp1 - 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUG*UUUUU
Length
8 nucleotides
Bulged bases
7BHP|1|L5|U|4437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BHP_126 not in the Motif Atlas
Geometric match to IL_5TBW_105
Geometric discrepancy: 0.118
The information below is about IL_5TBW_105
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7BHP|1|L5|G|4405
7BHP|1|L5|U|4406
7BHP|1|L5|G|4407
*
7BHP|1|L5|U|4435
7BHP|1|L5|U|4436
7BHP|1|L5|U|4437
7BHP|1|L5|U|4438
7BHP|1|L5|U|4439

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LI
60S ribosomal protein L10-like

Coloring options:


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