IL_7BHP_143

3D structure

PDB id

7BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1 - 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7BHP|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BHP_143 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2223

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7BHP|1|L5|G|4680
7BHP|1|L5|A|4681
7BHP|1|L5|U|4682
7BHP|1|L5|U|4683
7BHP|1|L5|A|4684
7BHP|1|L5|U|4685
*
7BHP|1|L5|A|4705
7BHP|1|L5|G|4706
7BHP|1|L5|A|4707
7BHP|1|L5|A|4708
7BHP|1|L5|U|4709
7BHP|1|L5|C|4710

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40