IL_7BL2_118

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUGUGUAGGAUAG*CCUU

Length

17 nucleotides

Bulged bases

7BL2|1|A|U|2111, 7BL2|1|A|G|2112, 7BL2|1|A|G|2116, 7BL2|1|A|U|2118, 7BL2|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL2_118 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.308

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7BL2|1|A|A|2108
7BL2|1|A|U|2109
7BL2|1|A|G|2110
7BL2|1|A|U|2111
7BL2|1|A|G|2112
7BL2|1|A|U|2113
7BL2|1|A|A|2114
7BL2|1|A|G|2115
7BL2|1|A|G|2116
7BL2|1|A|A|2117
7BL2|1|A|U|2118
7BL2|1|A|A|2119
7BL2|1|A|G|2120
*
7BL2|1|A|C|2178
7BL2|1|A|C|2179
7BL2|1|A|U|2180
7BL2|1|A|U|2181

Current chains

Chain A

23S ribosomal RNA

Nearby chains