IL_7BL6_006

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL6_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1298

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7BL6|1|A|G|188
7BL6|1|A|G|189
7BL6|1|A|A|190
7BL6|1|A|A|191
7BL6|1|A|C|192
7BL6|1|A|U|193
7BL6|1|A|G|194
*
7BL6|1|A|C|201
7BL6|1|A|U|202
7BL6|1|A|A|203
7BL6|1|A|A|204
7BL6|1|A|G|205
7BL6|1|A|U|206
7BL6|1|A|A|207
7BL6|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28