3D structure

PDB id
7BL6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S-ObgE-GMPPNP particle
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BL6_027 not in the Motif Atlas
Homologous match to IL_5J7L_272
Geometric discrepancy: 0.184
The information below is about IL_5J7L_272
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_26222.2
Basepair signature
cWW-cWS-cSH-tWH-R-L-R-cWW
Number of instances in this motif group
6

Unit IDs

7BL6|1|A|G|864
7BL6|1|A|C|865
7BL6|1|A|A|866
7BL6|1|A|C|867
7BL6|1|A|U|868
*
7BL6|1|A|A|909
7BL6|1|A|A|910
7BL6|1|A|A|911
7BL6|1|A|C|912

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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