IL_7BL6_084

3D structure

PDB id

7BL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S-ObgE-GMPPNP particle

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

7BL6|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BL6_084 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3544

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

7BL6|1|A|G|2124
7BL6|1|A|G|2125
7BL6|1|A|A|2126
7BL6|1|A|G|2127
7BL6|1|A|G|2128
*
7BL6|1|A|C|2160
7BL6|1|A|C|2161
7BL6|1|A|G|2162
7BL6|1|A|A|2163
7BL6|1|A|C|2164
7BL6|1|A|C|2165
7BL6|1|A|U|2166
7BL6|1|A|U|2167
7BL6|1|A|G|2168
7BL6|1|A|A|2169
7BL6|1|A|A|2170
7BL6|1|A|A|2171
7BL6|1|A|U|2172
7BL6|1|A|A|2173
7BL6|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains