3D structure

PDB id
7BL6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S-ObgE-GMPPNP particle
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7BL6_100 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.1634
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7BL6|1|A|C|2652
7BL6|1|A|U|2653
7BL6|1|A|A|2654
7BL6|1|A|G|2655
7BL6|1|A|U|2656
7BL6|1|A|A|2657
7BL6|1|A|C|2658
*
7BL6|1|A|G|2663
7BL6|1|A|G|2664
7BL6|1|A|A|2665
7BL6|1|A|C|2666
7BL6|1|A|C|2667
7BL6|1|A|G|2668

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 9
GTPase ObgE/CgtA
Chain G
50S ribosomal protein L6

Coloring options:


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