IL_7BT6_003

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

AAUC*GUU

Length

7 nucleotides

Bulged bases

7BT6|1|1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_003 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2038

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7BT6|1|1|A|12
7BT6|1|1|A|13
7BT6|1|1|U|14
7BT6|1|1|C|15
*
7BT6|1|2|G|144
7BT6|1|2|U|145
7BT6|1|2|U|146

Current chains

Chain 1

RDN25-1 rRNA

Chain 2

RDN5.8-1 rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A