IL_7BT6_023

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CGUC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_023 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.1941

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7BT6|1|1|C|667
7BT6|1|1|G|668
7BT6|1|1|U|669
7BT6|1|1|C|670
*
7BT6|1|1|G|792
7BT6|1|1|C|793
7BT6|1|1|U|794
7BT6|1|1|G|795

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Q

60S ribosomal protein L18-A