IL_7BT6_060

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

7BT6|1|1|U|1820, 7BT6|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_060 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.247

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7BT6|1|1|G|1623
7BT6|1|1|G|1624
*
7BT6|1|1|U|1819
7BT6|1|1|U|1820
7BT6|1|1|U|1821
7BT6|1|1|C|1822

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38