IL_7BT6_118
3D structure
- PDB id
- 7BT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7BT6_118 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1491
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
7BT6|1|2|A|44
7BT6|1|2|C|45
7BT6|1|2|G|46
7BT6|1|2|C|47
7BT6|1|2|A|48
7BT6|1|2|G|49
7BT6|1|2|C|50
7BT6|1|2|G|51
7BT6|1|2|A|52
7BT6|1|2|A|53
7BT6|1|2|A|54
7BT6|1|2|U|55
7BT6|1|2|G|56
7BT6|1|2|C|57
7BT6|1|2|G|58
7BT6|1|2|A|59
7BT6|1|2|U|60
7BT6|1|2|A|61
7BT6|1|2|C|62
7BT6|1|2|G|63
7BT6|1|2|U|64
*
7BT6|1|2|A|96
7BT6|1|2|A|97
7BT6|1|2|U|98
7BT6|1|2|C|99
7BT6|1|2|U|100
Current chains
- Chain 2
- RDN5.8-1 rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: