IL_7BT6_140

3D structure

PDB id

7BT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GCUC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BT6_140 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1989

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7BT6|1|1|G|1940
7BT6|1|1|C|1941
7BT6|1|1|U|1942
7BT6|1|1|C|1943
*
7BT6|1|1|G|2105
7BT6|1|1|A|2106
7BT6|1|1|A|2107
7BT6|1|1|C|2108

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A