IL_7BV8_066

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7BV8|1|A|A|1801, 7BV8|1|A|C|1816, 7BV8|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7BV8|1|A|U|1798
7BV8|1|A|G|1799
7BV8|1|A|C|1800
7BV8|1|A|A|1801
7BV8|1|A|A|1802
7BV8|1|A|A|1803
7BV8|1|A|C|1804
*
7BV8|1|A|G|1813
7BV8|1|A|G|1814
7BV8|1|A|A|1815
7BV8|1|A|C|1816
7BV8|1|A|G|1817
7BV8|1|A|U|1818
7BV8|1|A|A|1819
7BV8|1|A|U|1820
7BV8|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2