IL_7BV8_112

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UUUC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7BV8_112 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2402

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7BV8|1|A|U|870
7BV8|1|A|U|871
7BV8|1|A|U|872
7BV8|1|A|C|873
*
7BV8|1|A|G|904
7BV8|1|A|A|905
7BV8|1|A|U|906
7BV8|1|A|G|907

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16