IL_7CPJ_067

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7CPJ|1|A|A|1801, 7CPJ|1|A|C|1816, 7CPJ|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPJ_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7CPJ|1|A|U|1798
7CPJ|1|A|G|1799
7CPJ|1|A|C|1800
7CPJ|1|A|A|1801
7CPJ|1|A|A|1802
7CPJ|1|A|A|1803
7CPJ|1|A|C|1804
*
7CPJ|1|A|G|1813
7CPJ|1|A|G|1814
7CPJ|1|A|A|1815
7CPJ|1|A|C|1816
7CPJ|1|A|G|1817
7CPJ|1|A|U|1818
7CPJ|1|A|A|1819
7CPJ|1|A|U|1820
7CPJ|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA