IL_7CPU_035

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUC*GUCCG

Length

8 nucleotides

Bulged bases

7CPU|1|L5|U|1048, 7CPU|1|L5|C|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_035 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2905

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

7CPU|1|L5|C|938
7CPU|1|L5|U|939
7CPU|1|L5|C|940
*
7CPU|1|L5|G|1047
7CPU|1|L5|U|1048
7CPU|1|L5|C|1049
7CPU|1|L5|C|1050
7CPU|1|L5|G|1051

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29