IL_42997.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_5E81_401	5E81	0.4960	0		3L	tRNA	C	67	G	68	A	69	*	U	4	C	5	G	6	cWW	cWS	cWW
2	IL_8B0X_105	8B0X	0.2363	1	Isolated cWS basepair (H)	a	LSU rRNA	C	1198	G	1199	U	1200	*	A	1249	U	1251	G	1252	cWW	cWS	cWW
3	IL_4WF9_044	4WF9	0.1662	1	Isolated cWS basepair	X	LSU rRNA	C	1235	G	1236	U	1237	*	A	1285	U	1287	G	1288	cWW	cWS	cWW
4	IL_9DFE_044	9DFE	0.1834	1		1A	LSU rRNA	C	1196	G	1197	U	1198	*	A	1247	U	1249	G	1250	cWW	cWS	cWW
5	IL_7A0S_041	7A0S	0.1495	1	Isolated cWS basepair	X	LSU rRNA	C	1210	G	1211	U	1212	*	A	1260	U	1262	G	1263	cWW	cWS	cWW
6	IL_9E6Q_049	9E6Q	0.0977	1	Isolated cWS basepair (H)	1	LSU rRNA	C	1324	G	1325	C	1326	*	G	1374	C	1376	G	1377	cWW	cWS	cWW
7	IL_4V9F_046	4V9F	0.0000	1	Isolated cWS basepair	0	LSU rRNA	C	1301	G	1302	C	1303	*	G	1351	C	1353	G	1354	cWW	cWS	cWW
8	IL_8OI5_058	8OI5	0.0865	1		1	LSU rRNA	C	1372	G	1373	U	1374	*	A	1424	U	1426	G	1427	cWW	cWS	cWW
9	IL_8P9A_285	8P9A	0.0784	1		AR	LSU rRNA	C	1376	G	1377	U	1378	*	A	1428	U	1430	G	1431	cWW	cWS	cWW
10	IL_8GLP_084	8GLP	0.0774	1	Isolated cWS basepair (H)	L5	LSU rRNA	C	2290	G	2291	C	2292	*	G	2342	U	2344	G	2345	cWW	cWS	cWW
11	IL_1U6B_001	1U6B	0.2814	1	Isolated non-canonical cWW pair	B	197-MER	C	29	A	30	C	31	*	G	19	C	20	G	22	cWW	ncWW	cWW
12	IL_9DFE_029	9DFE	0.3646	0		1A	LSU rRNA	U	905	G	906	U	907	*	A	870	U	871	A	872	cWW	cWS	cWW
13	IL_4V9F_077	4V9F	0.4147	0	Isolated near basepair	0	LSU rRNA	G	2237	A	2238	C	2239	*	G	2136	A	2137	C	2138	cWW		ncWW
14	IL_3NJ7_004	3NJ7	0.4189	0	Isolated near basepair	D+C	RNA (10-mer)	C	3	A	4	G	5	*	C	6	A	7	G	8	cWW		cWW
15	IL_3NJ7_003	3NJ7	0.4189	0	Isolated near basepair	C+D	RNA (10-mer)	C	3	A	4	G	5	*	C	6	A	7	G	8	cWW		cWW
16	IL_8CRE_412	8CRE	0.4256	0	Isolated non-canonical cWW pair (H)	CM	SSU rRNA	A	418	A	419	G	420	*	C	409	A	410	U	411	cWW		cWW
17	IL_8GLP_325	8GLP	0.3967	0	Isolated non-canonical cWW pair (H)	S2	SSU rRNA	C	459	A	460	U	461	*	A2M	468	A	469	G	470	cWW		cWW
18	IL_8P9A_395	8P9A	0.4318	0	Isolated near basepair (H)	sR	SSU rRNA	C	411	A	412	U	413	*	A	420	A	421	G	422	cWW	ncwW	cWW
19	IL_2ZI0_001	2ZI0	0.4547	0	Isolated near basepair	C+D	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW		cWW
20	IL_7A0S_030	7A0S	0.4471	0	Isolated near basepair	X	LSU rRNA	U	917	A	918	U	919	*	A	883	C	884	A	885	cWW		cWW
21	IL_8GLP_043	8GLP	0.5261	2		L5	LSU rRNA	G	1213	C	1216	G	1217	*	C	1082	U	1083	C	1084	cWW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGU*AGUG	6
CGC*GACG	2
CAG*CAG	2
CGA*UCG	1
CGC*GGUG	1
CAC*GCCG	1
UGU*AUA	1
GAC*GAC	1
AAG*CAU	1
CAU*(A2M)AG	1
CAU*AAG	1
UUA*UUA	1
UAU*ACA	1
GCCCG*CUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*GU	7
A*A	6
G*AC	2
G*C	1
A*CC	1
G*U	1
U*U	1
A*C	1
CCC*U	1

Release history

Release	4.0
Date	2025-08-13
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_42997.4 Version IL_42997.4 of this group appears in releases 4.0 to 4.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_42997.4 Version IL_42997.4 of this group appears in releases 4.0 to 4.0

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Csv

Json