IL_7CPU_042

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_042 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3048

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7CPU|1|L5|G|1239
7CPU|1|L5|G|1240
7CPU|1|L5|A|1241
7CPU|1|L5|U|1242
7CPU|1|L5|C|1243
*
7CPU|1|L5|G|1269
7CPU|1|L5|C|1270
7CPU|1|L5|G|1271
7CPU|1|L5|C|1272
7CPU|1|L5|A|1273
7CPU|1|L5|C|1274

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29