IL_7CPU_054

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

7CPU|1|L5|G|1439, 7CPU|1|L5|A|1451, 7CPU|1|L5|A|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_054 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0634

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7CPU|1|L5|G|1438
7CPU|1|L5|G|1439
7CPU|1|L5|G|1440
*
7CPU|1|L5|U|1450
7CPU|1|L5|A|1451
7CPU|1|L5|A|1452
7CPU|1|L5|U|1453
7CPU|1|L5|C|1454

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37