IL_7CPU_072

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

7CPU|1|L5|C|1738, 7CPU|1|L5|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_072 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1519

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7CPU|1|L5|G|1736
7CPU|1|L5|A|1737
7CPU|1|L5|C|1738
7CPU|1|L5|C|1739
7CPU|1|L5|C|1740
7CPU|1|L5|C|1741
7CPU|1|L5|A|1742
7CPU|1|L5|G|1743
7CPU|1|L5|A|1744
7CPU|1|L5|A|1745
7CPU|1|L5|A|1746
7CPU|1|L5|A|1747
*
7CPU|1|L5|U|1841
7CPU|1|L5|G|1842
7CPU|1|L5|A|1843
7CPU|1|L5|A|1844
7CPU|1|L5|A|1845
7CPU|1|L5|A|1846
7CPU|1|L5|U|1847
7CPU|1|L5|G|1848
7CPU|1|L5|G|1849
7CPU|1|L5|A|1850
7CPU|1|L5|U|1851
7CPU|1|L5|G|1852
7CPU|1|L5|G|1853
7CPU|1|L5|C|1854
7CPU|1|L5|G|1855
7CPU|1|L5|C|1856

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40