IL_7CPU_081
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 7CPU|1|L5|A|2269, 7CPU|1|L5|A|2270
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_081 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0912
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7CPU|1|L5|C|2203
7CPU|1|L5|U|2204
7CPU|1|L5|G|2205
7CPU|1|L5|A|2206
7CPU|1|L5|G|2207
*
7CPU|1|L5|C|2266
7CPU|1|L5|G|2267
7CPU|1|L5|A|2268
7CPU|1|L5|A|2269
7CPU|1|L5|A|2270
7CPU|1|L5|G|2271
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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