IL_7CPU_083

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

7CPU|1|L5|G|2301, 7CPU|1|L5|U|2302, 7CPU|1|L5|G|2303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_083 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2562

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7CPU|1|L5|G|2299
7CPU|1|L5|A|2300
7CPU|1|L5|G|2301
7CPU|1|L5|U|2302
7CPU|1|L5|G|2303
7CPU|1|L5|G|2304
*
7CPU|1|L5|C|2526
7CPU|1|L5|G|2527
7CPU|1|L5|C|2528

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38