IL_7CPU_084

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

7CPU|1|L5|U|2523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_084 not in the Motif Atlas

Geometric match to IL_2A64_002

Geometric discrepancy: 0.2694

The information below is about IL_2A64_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7CPU|1|L5|G|2306
7CPU|1|L5|G|2307
*
7CPU|1|L5|C|2522
7CPU|1|L5|U|2523
7CPU|1|L5|C|2524

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34