IL_7CPU_087

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7CPU|1|L5|A|2479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_087 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.1998

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7CPU|1|L5|C|2367
7CPU|1|L5|C|2368
*
7CPU|1|L5|G|2478
7CPU|1|L5|A|2479
7CPU|1|L5|G|2480

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34