IL_7CPU_096
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 7CPU|1|L5|U|2634
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_096 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0818
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
7CPU|1|L5|C|2621
7CPU|1|L5|G|2622
7CPU|1|L5|U|2623
7CPU|1|L5|A|2624
7CPU|1|L5|A|2625
7CPU|1|L5|C|2626
*
7CPU|1|L5|G|2631
7CPU|1|L5|G|2632
7CPU|1|L5|A|2633
7CPU|1|L5|U|2634
7CPU|1|L5|A|2635
7CPU|1|L5|A|2636
7CPU|1|L5|G|2637
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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