IL_7CPU_100

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7CPU|1|L5|A|3320, 7CPU|1|L5|U|3336, 7CPU|1|L5|C|3340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_100 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0729

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7CPU|1|L5|C|3317
7CPU|1|L5|G|3318
7CPU|1|L5|A|3319
7CPU|1|L5|A|3320
7CPU|1|L5|G|3321
7CPU|1|L5|G|3322
*
7CPU|1|L5|U|3334
7CPU|1|L5|G|3335
7CPU|1|L5|U|3336
7CPU|1|L5|U|3337
7CPU|1|L5|G|3338
7CPU|1|L5|A|3339
7CPU|1|L5|C|3340
7CPU|1|L5|G|3341

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA