IL_7CPU_105
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_105 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1376
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7CPU|1|L5|U|3372
7CPU|1|L5|C|3373
7CPU|1|L5|A|3374
7CPU|1|L5|A|3375
7CPU|1|L5|A|3376
7CPU|1|L5|G|3377
7CPU|1|L5|U|3378
*
7CPU|1|L5|A|3389
7CPU|1|L5|A|3390
7CPU|1|L5|U|3391
7CPU|1|L5|G|3392
7CPU|1|L5|A|3393
7CPU|1|L5|A|3394
7CPU|1|L5|G|3395
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
- Chain S6
- Transfer RNA; tRNA
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