IL_7CPU_126

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7CPU|1|L5|G|4175, 7CPU|1|L5|A|4176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_126 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0647

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7CPU|1|L5|C|4109
7CPU|1|L5|U|4110
7CPU|1|L5|C|4111
*
7CPU|1|L5|G|4173
7CPU|1|L5|U|4174
7CPU|1|L5|G|4175
7CPU|1|L5|A|4176
7CPU|1|L5|G|4177

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23