IL_7CPU_133

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7CPU|1|L5|C|4373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_133 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.3629

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_10484.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7CPU|1|L5|C|4235
7CPU|1|L5|C|4236
7CPU|1|L5|A|4237
7CPU|1|L5|U|4238
*
7CPU|1|L5|A|4370
7CPU|1|L5|G|4371
7CPU|1|L5|G|4372
7CPU|1|L5|C|4373
7CPU|1|L5|G|4374

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a