IL_7CPU_143

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_143 not in the Motif Atlas

Geometric match to IL_3BNT_001

Geometric discrepancy: 0.1234

The information below is about IL_3BNT_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7CPU|1|L5|C|4401
7CPU|1|L5|U|4402
7CPU|1|L5|C|4403
*
7CPU|1|L5|G|4599
7CPU|1|L5|U|4600
7CPU|1|L5|G|4601

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lf

60S ribosomal protein L35a