IL_7CPU_170
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UACGCAC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 7CPU|1|S2|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_170 not in the Motif Atlas
- Geometric match to IL_2NPY_001
- Geometric discrepancy: 0.373
- The information below is about IL_2NPY_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80926.1
- Basepair signature
- cWW-cWW-tSH-tHS-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7CPU|1|S2|U|63
7CPU|1|S2|A|64
7CPU|1|S2|C|65
7CPU|1|S2|G|66
7CPU|1|S2|C|67
7CPU|1|S2|A|68
7CPU|1|S2|C|69
*
7CPU|1|S2|G|80
7CPU|1|S2|U|81
7CPU|1|S2|G|82
7CPU|1|S2|A|83
7CPU|1|S2|A|84
7CPU|1|S2|A|85
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
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