IL_7CPU_174
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7CPU|1|S2|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPU_174 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1774
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7CPU|1|S2|G|145
7CPU|1|S2|G|146
7CPU|1|S2|A|147
7CPU|1|S2|U|148
7CPU|1|S2|A|149
7CPU|1|S2|A|150
7CPU|1|S2|C|151
*
7CPU|1|S2|G|167
7CPU|1|S2|C|168
7CPU|1|S2|U|169
7CPU|1|S2|A|170
7CPU|1|S2|A|171
7CPU|1|S2|U|172
7CPU|1|S2|A|173
7CPU|1|S2|C|174
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: