IL_7CPU_242

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7CPU|1|S2|U|1722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_242 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.1826

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7CPU|1|S2|U|1721
7CPU|1|S2|U|1722
7CPU|1|S2|G|1723
*
7CPU|1|S2|U|1813
7CPU|1|S2|A|1814

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23