IL_7CPU_248

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGACC*GUGGUCG

Length

12 nucleotides

Bulged bases

7CPU|1|L5|U|1032, 7CPU|1|L5|C|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_248 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3197

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

7CPU|1|L5|C|949
7CPU|1|L5|G|950
7CPU|1|L5|A|951
7CPU|1|L5|C|952
7CPU|1|L5|C|953
*
7CPU|1|L5|G|1031
7CPU|1|L5|U|1032
7CPU|1|L5|G|1033
7CPU|1|L5|G|1034
7CPU|1|L5|U|1035
7CPU|1|L5|C|1036
7CPU|1|L5|G|1037

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21