IL_7CPU_261

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCCC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_261 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3134

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7CPU|1|S2|G|1271
7CPU|1|S2|C|1272
7CPU|1|S2|C|1273
7CPU|1|S2|C|1274
*
7CPU|1|S2|G|1511
7CPU|1|S2|U|1512
7CPU|1|S2|C|1513

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29