IL_7CPU_268

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCG*CGGC

Length

7 nucleotides

Bulged bases

7CPU|1|S2|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPU_268 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.2944

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7CPU|1|S2|G|1412
7CPU|1|S2|C|1413
7CPU|1|S2|G|1414
*
7CPU|1|S2|C|1428
7CPU|1|S2|G|1429
7CPU|1|S2|G|1430
7CPU|1|S2|C|1431

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain ST

40S ribosomal protein S19