IL_7CPV_031

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7CPV|1|L5|G|756, 7CPV|1|L5|C|816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_031 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1678

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7CPV|1|L5|G|753
7CPV|1|L5|A|754
7CPV|1|L5|A|755
7CPV|1|L5|G|756
7CPV|1|L5|G|757
7CPV|1|L5|U|758
7CPV|1|L5|G|759
7CPV|1|L5|G|760
*
7CPV|1|L5|U|811
7CPV|1|L5|G|812
7CPV|1|L5|U|813
7CPV|1|L5|U|814
7CPV|1|L5|A|815
7CPV|1|L5|C|816
7CPV|1|L5|A|817
7CPV|1|L5|G|818
7CPV|1|L5|C|819

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a