IL_7CPV_036

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAC*GGUCG

Length

9 nucleotides

Bulged bases

7CPV|1|L5|C|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_036 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2674

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7CPV|1|L5|C|949
7CPV|1|L5|G|950
7CPV|1|L5|A|951
7CPV|1|L5|C|952
*
7CPV|1|L5|G|1033
7CPV|1|L5|G|1034
7CPV|1|L5|U|1035
7CPV|1|L5|C|1036
7CPV|1|L5|G|1037

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21