IL_7CPV_052
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 7CPV|1|L5|G|1439, 7CPV|1|L5|A|1451, 7CPV|1|L5|A|1452
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_052 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0745
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7CPV|1|L5|G|1438
7CPV|1|L5|G|1439
7CPV|1|L5|G|1440
*
7CPV|1|L5|U|1450
7CPV|1|L5|A|1451
7CPV|1|L5|A|1452
7CPV|1|L5|U|1453
7CPV|1|L5|C|1454
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LN
- 60S ribosomal protein L15
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
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