IL_7CPV_077

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7CPV_077 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0918

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7CPV|1|L5|G|2115
7CPV|1|L5|U|2116
7CPV|1|L5|A|2117
7CPV|1|L5|G|2118
7CPV|1|L5|U|2119
7CPV|1|L5|A|2120
7CPV|1|L5|G|2121
*
7CPV|1|L5|C|3515
7CPV|1|L5|G|3516
7CPV|1|L5|A|3517
7CPV|1|L5|A|3518
7CPV|1|L5|A|3519
7CPV|1|L5|C|3520

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17