IL_7CPV_089
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 7CPV|1|L5|U|2415, 7CPV|1|L5|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_089 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1599
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7CPV|1|L5|U|2410
7CPV|1|L5|G|2411
7CPV|1|L5|G|2412
7CPV|1|L5|A|2413
7CPV|1|L5|A|2414
7CPV|1|L5|U|2415
7CPV|1|L5|G|2416
*
7CPV|1|L5|C|2426
7CPV|1|L5|G|2427
7CPV|1|L5|A|2428
7CPV|1|L5|G|2429
7CPV|1|L5|A|2430
7CPV|1|L5|G|2431
7CPV|1|L5|A|2432
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain SN
- 40S ribosomal protein S13
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