IL_7CPV_176
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7CPV|1|S2|U|362, 7CPV|1|S2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_176 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1253
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7CPV|1|S2|U|360
7CPV|1|S2|A|361
7CPV|1|S2|U|362
7CPV|1|S2|C|363
7CPV|1|S2|A|364
7CPV|1|S2|A|365
*
7CPV|1|S2|U|397
7CPV|1|S2|G|398
7CPV|1|S2|A|399
7CPV|1|S2|C|400
7CPV|1|S2|C|401
7CPV|1|S2|A|402
7CPV|1|S2|C|403
7CPV|1|S2|G|404
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: