IL_7CPV_190
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7CPV|1|S2|A|629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_190 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1955
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7CPV|1|S2|G|612
7CPV|1|S2|U|613
7CPV|1|S2|G|614
7CPV|1|S2|C|615
7CPV|1|S2|C|616
7CPV|1|S2|A|617
7CPV|1|S2|G|618
*
7CPV|1|S2|C|625
7CPV|1|S2|G|626
7CPV|1|S2|G|627
7CPV|1|S2|U|628
7CPV|1|S2|A|629
7CPV|1|S2|A|630
7CPV|1|S2|U|631
7CPV|1|S2|U|632
7CPV|1|S2|C|633
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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