IL_7CPV_215
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7CPV|1|S2|C|1216, 7CPV|1|S2|C|1217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7CPV_215 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1143
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
7CPV|1|S2|A|1215
7CPV|1|S2|C|1216
7CPV|1|S2|C|1217
7CPV|1|S2|A|1218
*
7CPV|1|S2|U|1682
7CPV|1|S2|C|1683
7CPV|1|S2|C|1684
7CPV|1|S2|C|1685
7CPV|1|S2|U|1686
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sa
- 40S ribosomal protein S26
- Chain Sc
- 40S ribosomal protein S28
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