3D structure

PDB id
7D4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UCGU*AA
Length
6 nucleotides
Bulged bases
7D4I|1|SA|C|114, 7D4I|1|SA|G|115
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7D4I_017 not in the Motif Atlas
Homologous match to IL_4V88_392
Geometric discrepancy: 0.2495
The information below is about IL_4V88_392
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

7D4I|1|SA|U|113
7D4I|1|SA|C|114
7D4I|1|SA|G|115
7D4I|1|SA|U|116
*
7D4I|1|SA|A|300
7D4I|1|SA|A|301

Current chains

Chain SA
18S rRNA

Nearby chains

Chain SF
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S8-A
Chain SM
40S ribosomal protein S11-A

Coloring options:


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